PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00589.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 481aa    MW: 53231.7 Da    PI: 6.7998
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00589.1_g00013.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP113.72.5e-35130256389
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec....eae 76 
                              g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++        + ++ ++c    +++
  Sme2.5_00589.1_g00013.1 130 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELppwkpttgEYDDDNNCkvvgSSS 215
                              89*************************************************************99888777444445564332111 PP

                      TCP  77 sssssasnsssg..............................k 89 
                              ++ +sas+s  g                               
  Sme2.5_00589.1_g00013.1 216 KRANSASSS--GengngngsslppsldsdaisdtiksffpmgG 256
                              111111111..12233345556666666555555444444441 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-32130274IPR005333Transcription factor, TCP
PROSITE profilePS5136933.273131189IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MARKTINNSK LEYNKVLNLD PQRKKRKKIL HHHYQNVDEE EEEEEENDFH IQNQEQVFHF  60
QQPHELFSHH FLYQDIENTP TQAQSKKRSY FPPPPPPLPP PHKQKLVTSS RFGGGEIVEV  120
QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY DVQDRLGYDR PSKAVDWLIK  180
KAKAAIDELD ELPPWKPTTG EYDDDNNCKV VGSSSKRANS ASSSGENGNG NGSSLPPSLD  240
SDAISDTIKS FFPMGGGSTQ GNSTSMQFQS FQENNLFSRT SGQSQDLKLS LQSFQDPFNH  300
HIEQSQTQFQ ASSFYTGSIP LVGFDASSWP DHQEQQQPVE LGRLTAARAG GDTSMALGGG  360
ANSGASCYVL NSPFAPPLLQ ELFGQNQFLS QRGPLQSSYS PSIRAWIDPS AIAISTADPI  420
HQHQHHQAVL PMYSASVSGI GFASEVGGFS GFRIPTRIQG EIEEHDGISN KPSCASSDSR  480
H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12327KKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358953.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR56e-99TCP4_ARATH; Transcription factor TCP4
TrEMBLM1B8S20.0M1B8S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000397860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-95TCP family protein